Projects

@ColibriCytometry

The tools

There are some R-based tools here that you're welcome to try out. They may be useful for getting your feet wet in coding. Nowadays, there are some really nice tools with user-friendly, web-based portals being produced open-source, plus all the commercial options.

@ColibriCytometry

YouTube channel for talks and tutorial videos.

20220825-5R3A8395-Broad-billed Hummingbird.jpg

Simplified-flowcytoscript

User-friendly high dimensional data analysis in R. Use FlowSOM, Phenograph, tSNE and UMAP without knowing how to code.

Code here. Tutorials here.

Sample data here.

FlowGraphs

Automated graphing of flow cytometry data tables, such as those exported from FlowJo. A simple script in R.

Other resources

Here are some relatively complete, flow cytometry analysis pipelines that should be free to use. I haven't used these.

Cytofast
Shiny MARMOT: pipeline and publication
PICAFlow and also here
CytoPipeline and CytoPipelineGUI
CytoFeature Engineering

Advanced-flowcytoscript

All the features of the simplified script, but with more control. For those with some experience working in R.

Code here.